Public Data

Genome Sequencing

Telomeres

• New telomere clones and sequences added to the published rice genome sequence data

Centromeres

• Comparative analysis of complete orthologous centromeres from two subspecies of rice
• Nucleotide sequence of centromeric region of rice chromosome 8

Mutant database

• Rice insertion mutant database

EST Map

• A YAC-based Rice Transcript map containing 6,591 EST sites 2001

Genetic Map

• 332 PCR-based genetic markers on rice chromosomes. 2002
• The Latest High-Density Rice Genetic Map, Including 3267 Markers. 2000
• A HIGH-DENSITY RICE GENETIC MAP. 1998
• RICE GENETIC MAP IN NATURE GENETICS. 1994
• Doubled-haploid lines derived from a cross between two temperate japonica rice varieties, Akihikari and Koshihikari
• Genotype data for RI lines (Asominori X IR24) with 375 RFLP markers.
• RFLP analysis of japonica rice varieties.
• Genotype data (BC₁F₅) for a Backcross Inbred Lines (BILs) derived from Nipponbare / Kasalath // Nipponbare with 245 RFLP markers.

Physical Map

• End-sequencing and in silico mapping of BAC clones from an indica rice variery, Kasalath.. 2004
• The Latest YAC-base Physical Map of Rice 2001
• Rice Physical Mapping Data from RGP. 1997

List of cDNA clones

PDF file

• Experimental protocols (PDF)
  • Note: This PDF contains Japanese font which maybe unreadable in other systems.

• PAC-library.pdf (100Kb)

  Construction and Characterization of Rice Genomic Libraries: PAC
  Library of Japonica Variety, Nipponbare and BAC Library of Indica 
  Variety, Kasalath.
  	Bulletin of the NIAR, 14: 41-49