Rice Genome Mapping and Sequencing Data from RGP, STAFF/NIAR, Japan

Rice Physical Mapping Data from RGP

YAC contigs on the rice chromosomes.


	YAC clones selected with RGP DNA markers are shown.  A rice 
YAC library of RGP was constructed from cultured cells of Oryza sativa 
L. cv. Nipponbare. This library contains 6934 clones with 350 kb average 
insert length and covers 6 genome equivalents (Umehara, Y. et al1995 
Molecular Breeding 1: 79-89).
	In the figures, the horizontal bars on the upper side of each diagram 
represent our high-density genetic map (Kurata et al. 1994 Nature 
Genetics  8: 365-372).  Centimorgans shown at the ends of genetic map 
are genetic distances from the top of each chromosome.  Stretches with 
solid bars show the genetic distances covered by the YAC contigs.  DNA 
markers are denoted between YAC contigs and the linkage maps.  YACs 
are presented by thin bars on the lower sides of the figures.  Circles 
represent DNA markers located on those YACs.  YACs including gray 
circles were selected by co-existing DNA bands with RFLP markers, but 
not with the marker band itself.  The sizes of the YACs, including filled 
circles, are shown in kb.  The YACs labeled with clone numbers in brown 
letters, also carry DNA markers from a different location on the linkage 
map (candidate chimera).  Gray bars between black bars and circles 
show the parts of YACs not recognized by the corresponding DNA 
markers (candidate deletion).  The markers of black letters on the
genetic map could not identify any YACs in this study.  The markers
labeled with gray letters were not suitable for YAC screening because no
bands in Nipponbare, included multiple sequences or RAPD markers
which were not converted to STS.
	Here is the "YAC clones selected with DNA markers." If you 
click each chromosome number below, you can see the data files of YAC clones 
selected with DNA markers of the corresponding chromosome.


YAC contig figures
  Chr.1  (*1)
    region 1:  P61    (  0.0cM) - C434  ( 44.0cM)
    region 2:  C283   ( 44.5cM) - L884  ( 64.4cM)
    region 3:  L172B  ( 64.5cM) - R2159 (104.4cM)
    region 4:  L1087  (119.1cM) - R618  (150.1cM)
    region 5:  C955   (153.4cM) - R687  (191.8cM)

    (*1)These data were published in Wang et.al (1996), 
        DNA Research, 3, 291-296. 

  Chr.2  (*2)
    region 1:  C1470   (  0.0cM) - R418   ( 35.8cM)
    region 2:  W142A   ( 38.0cM) - R26     ( 70.3M)
    region 3:  C499    ( 75.9cM) - Y2724R (115.3cM)
    region 4:  V5A     (119.7cM) - C1357  (156.1cM)

    (*2)These data were published in Umehara et.al (1997), 
        DNA Research, 4, 127-131. 

  Chr.3  (*3)
    region 1:  L375    (  0.0cM) - R1538 ( 39.7cM)
    region 2:  C1351   ( 42.4cM) - C730  ( 105.3M)
    region 3:  C582    (106.7cM) - R461  (144.4cM)
    region 4:  C1051   (147.7cM) - R1468A(168.5cM)

    (*3)These data were published in Tanoue et.al (1997), 
        DNA Research, 4, 133-140. 

  Chr.4  (*4)
    region 1:  C445  (  0.0cM) - G102  ( 27.3cM)
    region 2:  C1100 ( 31.4cM) - R2343 ( 59.3cM)
    region 3:  C513  ( 61.5cM) - L363D (106.0cM)
    region 4:  C933  (109.0cM) - R2373 (129.0cM)

    (*4)These data were published in Koike et.al (1997), 
        DNA Research, 4, 27-33. 

  Chr.5  (*5)
    region 1:  C263  (  0.0cM) - Y1060R ( 38.8cM)
    region 2:  C249  ( 41.4cM) - P8     ( 58.7cM)
    region 3:  G1458 ( 67.2cM) - C419   (102.2cM)
    region 4:  C1018 (103.5cM) - C1230  (123.7cM)

    (*5)These data were published in Saji et.al (1996), 
        DNA Research, 3, 297-302. 

  Chr.6  (*6)
    region 1:  W160  (  0.0cM) - P126 ( 42.2cM)
    region 2:  P108  ( 49.6cM) - P29  ( 75.1cM)
    region 3:  L414  ( 77.5cM) - R276 (107.6cM)
    region 4:  G329  (112.0cM) - P7   (130.4cM)

    (*6)These data were published in Umehara et.al (1996), 
        Genome Research, 6, 935-942. 

  Chr.7  (*4)
    region 1:   R1744 ( 0.0cM) - R1382 ( 54.6cM)
    region 2:   C492  (55.4cM) - T21   ( 82.1cM)
    region 3:   C1521 (82.6cM) - C794B (128.7cM)

  Chr.8  (*7)
    region 1:  C83   (  0.0cM) - P63  ( 64.3cM)
    region 2:  C1356 ( 66.4cM) - P122 (124.8cM)

  Chr.9  (*7)
    region 1:  Y2769L(  0.0cM) - P52   ( 64.4cM)
    region 2:  C1227 ( 68.9cM) - L984  (100.5cM)

    (*7)These data were published in Antonio et.al (1996),
        DNA Research, 3, 393-400

  Chr.10  (*8)
    region 1:  L769  (  0.0cM) - C1166 ( 31.5cM)
    region 2:  C1633 ( 33.2cM) - C223  ( 85.6cM)

  Chr.11  (*3)
    region 1:  TEL  (  0.0cM) - P54   ( 57.5cM)
    region 2:  G202 ( 63.4cM) - TEL2B ( 123.3M)

  Chr.12  (*8)
    region 1:  C901  (  0.0cM) - V11A  ( 60.6cM)
    region 2:  P80   ( 62.7cM) - G193  (112.1cM)

    (*8)These data were published in Shimokawa et.al (1996),
        DNA Research, 3, 401-406
mat@nias.affrc.go.jp
last updated 1997.07.09 RICE GENOME RESEARCH PROGRAM (RGP) HOME PAGE