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A HIGH-DENSITY RICE GENETIC MAPAccording to the publication of our high-density RFLP linkage map in the journal "Genetics" (January 1998), we provide here a large amount of relevant data that can not be published in the form of a printed paper. The data includes map figures, isozyme loci and a table linked with parental Southern images of each probe and sequence, and other related clone information. The table also includes the results of similarity search of mapped clones. In addition to all the data mentioned above, genotype data for all segregants (186 individuals) and linkage order information are available from our data server. High-density linkage maps (Figure)This rice RFLP linkage map was constructed with 2275 DNA markers on 1157 points, Markers are indicated by clone names denoted with C, R, G, Y, L, P, T, W, B, M, V or TEL numbers. The first letter of the marker name indicates the category of mapped clones as follows: C, cDNA clones derived from callus library; R, cDNAs from root library; G, random genomic clones; Y, YAC-end clones; L, Not I linking clones; P, randomly amplified polymorphic DNAs; T, STS markers; W, wheat clones; B, barley clones; M, maize clones; V and other symbols marked by underline, clones derived from other rice varieties; and TEL, telomere-associated sequences. W numbers correspond to the PSR numbers of clones developed by M. D. Gale (John Innes Centre, UK). Markers denoted with a V contain both genomic and cDNA clones including SINE1r6 isolated in other works. Letters A, B, C and D following the clone number indicate that those loci were assigned by mapping with one of the polymorphic DNA fragments of the multiple copy sequences. L and R following the Y number marker indicate left and right end clones, respectively, of YAC clones. All information for the map, including the accession numbers of the sequences in DDBJ (DNA DataBank of Japan), are available in the map table. All genotype data and marker order are also available from our data server.
Chromosome2 Chromosome3 Chromosome4 Chromosome5 Chromosome6 Chromosome7 Chromosome8 Chromosome9 Chromosome10 Chromosome11 Chromosome12 High-density linkage maps (Table)
chromosome2 chromosome3 chromosome4 chromosome5 chromosome6 chromosome7 chromosome8 chromosome9 chromosome10 chromosome11 chromosome12 Isozyme lociPlease direct questions and comments to (Masahiro Yano). In case of general queries on the RFLP map data availability, contact by email Masahiro Yano at myano@nias.affrc.go.jp.
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